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Tuesday, May 21, 2013
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Detailed Search
Sample Attributes
Name
Hospital/Institution
Type
-- Choose --
Cancer
Normal
Other
International Classification of Diseases
Topography
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C00-C14: Malignant neoplasms of lip, oral cavity and pharynx
C15-C26: Malignant neoplasms of digestive organs
C30-C39: Malignant neoplasms of respiratory and intrathoracic organs
C40-C41: Malignant neoplasms of bone and articular cartilage
C43-C44: Melanoma and other malignant neoplasms of skin
C45-C49: Malignant neoplasms of mesothelial and soft tissue
C50: Malignant neoplasm of breast
C51-C58: Malignant neoplasms of female genital organs
C60-C63: Malignant neoplasms of male genital organs
C64-C68: Malignant neoplasms of urinary tract
C69-C72: Malignant neoplasms of eye, brain and other parts of central nervous system
C73-C75: Malignant neoplasms of thyroid and other endocrine glands
C76-C80: Malignant neoplasms of ill-defined, secondary and unspecified sites
C81-C96: Malignant neoplasms of lymphoid, haematopoietic and related tissue
C97: Malignant neoplasms of independent (primary) multiple sites
D00-D09: In situ neoplasms
D10-D36: Benign neoplasms
D37-D48: Neoplasms of uncertain or unknown behaviour
Morphology
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C000-C006, C008-C009: Lip
C019-C024, C028-C029: Tongue
C030-C031, C039-C041, C048-C052, C058-C062, C068-C069: Gum, floor of mouth, & other mouth
C079-C081, C088-C089: Salivary gland
C090-C091, C098-C104, C108-C109: Oropharnyx
C110-C113, C118-C119: Nasopharynx
C129-C132, C138-C139: Hypopharynx
C140, C142, C148: Pharynx
C150-C155, C158-C159: Esophagus
C160-C166, C168-C169: Stomach
C170-C173, C178-C179: Small intestine
C180, C182-C189, C199: Large intestine, (excl. appendix)
C181: Appendix
C209: Rectum
C210-C212, C218: Anal canal & anus
C220: Liver
C221: Intrahepatic bile ducts
C239-C241, C248-C249: Gallbladder & extrahepatic bile ducts
C250-C254, C257-C259: Pancreas
C260, C268-C269: Unspecified digest. organs
C300: Nasal cavity (including nasal cartilage)
C301, C310-C313, C318-C319: Accessory, sinuses, middle & inner ear
C320-C323, C328-C329: Larynx
C339: Trachea
C340-C343, C348-C349: Lung & bronchus
C379: Thymus
C380: Heart
C381-C383, C388: Mediastinum
C384: Pleura
C390, C398-C399: Respiratory, nos
C400-C403, C408-C414, C418-C419: Bones & joints
C420, C421, C424: Blood, bone marrow, & hematopoietic sys
C422: Spleen
C423: Reticulo-endothelial
C440-C449: Skin
C470-C476, C478-C479, C490-C496, C498-C499: Connective & soft tissue
C480-C482, C488: Retroperitoneum & peritoneum
C500-C506, C508-C509: Breast
C510-C512, C518, C529: Vagina & labia
C519: Vulva, nos
C530-C531, C538-C539: Cervix uteri
C540-C543, C548-C549: Corpus uteri
C559: Uterus, nos
C569: Ovary
C570-C574, C577-C579: Other female genital
C589: Placenta
C600-C602, C608-C609, C632: Penis & scrotum
C619: Prostate gland
C620-C621, C629: Testis
C630, C631, C637-C639: Epididymis, spermatic cord, male genital, nos
C649: Kidney
C659, C669: Renal pelvis, ureter
C670-C679: Urinary bladder
C680-C681, C688-C689: Other urinary organs
C690-C691, C693, C695-C698: Orbit & lacrimal gland, (excl. retina, eye, nos)
C692: Retina
C694: Eyeball
C699: Eye, nos
C700-C701, C709: Meninges (cerebral,spinal)
C710-C714, C717-C719, C720-C725: Brain, & cranial nerves, & spinal cord, (excl. ventricle, cerebellum)
C715: Ventricle
C716: Cerebellum
C728-C729: Other nervous system
C739: Thyroid gland
C740-C741, C749: Adrenal glands
C750: Parathyroid gland
C751-C752: Pituitary gland
C753: Pineal gland
C754-C755, C758-C759: Other endocrine glands
C760-C768: Ill-defined
C770-C775, C778-C779: Lymph nodes
C809: Unknown
Clinical TNM Classification
Stage
-- Choose --
1
2
3
4
Tumor Invasion (T)
-- Choose --
1
2
3
4
Lymph Node Metastasis (N)
-- Choose --
0
1
2
3
Other Metastasis (M)
-- Choose --
0
1
eVOC Ontology
Development Stage
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adolescent {teenager,teens}
adult
child
embryo
fetus {foetus}
infant {newborn,neonate}
unclassifiable
Pathology
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congenital anomalies
degenerative disorders
genetic disorders
infectious disorders
inflammatory disorders
metabolic disorders
neoplasia {leukoplakia}
normal
other disorders
unclassifiable
Anatomical System
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alimentary system {digestive system}
anatomical site
cardiovascular system {vascular system}
dermal system
developmental anatomy
endocrine system
hematological system {hematopoietic}
lymphoreticular system {lymphoid tissue}
musculoskeletal system
nervous system
respiratory system
unclassifiable
urogenital system {genitourinary system}
Treatment
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clinical treatment
experimental treatment
not applicable
pending
treatment duration
Compound
Tissue Preparation
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bulk
cell line
flow-sorted {flow cytometric separation,fluorescent activated cell sorting,FACS}
microdissected
pending
unclassifiable
Cell Type
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acidophil cell
acinar cell
adipoblast
adipocyte {fat cell}
alpha cell
amacrine cell
beta cell
capsular cell
CD34+
CD4+
cementocyte
chief cell
chondroblast
chondrocyte
chromaffin cell
chromophobic cell
Claudius' cell {Claudius cell}
corticotroph
delta cell
dendritic cell
enterochromaffin cell {enteroendocrine cell,Kulchitsky cell,argentaffin cell}
ependymocyte {ependymal cell}
epithelial cell
erythroblast {normoblast}
erythrocyte {red blood cell}
fibroblast
fibrocyte
follicular cell
germ cell
germinal epithelium
giant cell
glial cell {neuroglia}
glioblast
goblet cell
gonadotroph
granulosa cell
haemocytoblast
hair cell
Hensen cell
hepatoblast
hepatocyte
hyalocyte
interstitial cell {Leydig cell}
juxtaglomerular cell
keratinocyte
keratocyte {prickle cell}
lemmal cell
leukocyte {leucocyte,white blood cell}
luteal cell
lymphocytic stem cell
lymphoid cell
lymphoid stem cell
macroglial cell
mammotroph
mast cell
medulloblast
megakaryoblast
megakaryocyte
melanoblast
melanocyte
Merkel cell
mesangial cell
mesothelial cell
metamyelocyte
monoblast
monocyte
mucous neck cell
muscle cell {myocyte}
myelocyte
myeloid cell
myeloid stem cell
Müller cell
myoblast
myoepithelial cell
myofibrobast
neuroblast
neuroepithelial cell
neuron
odontoblast
osteoblast
osteoclast
osteocyte
oxyntic cell {parietal cell}
Paneth cell
parafollicular cell
paraluteal cell
peptic cell
pericyte
peripheral blood mononuclear cell {PBMC}
phaeochromocyte
phalangeal cell {Deiters' cell}
pinealocyte
pituicyte
plasma cell
platelet
podocyte
proerythroblast
promonocyte
promyeloblast
promyelocyte
pronormoblast
Purkinje cell
reticulocyte
retinal pigment epithelial cell {pigmented retinal epithelial cell}
retinoblast
Schwann cell
Sertoli cell
small cell
small round cell
somatotroph
stem cell
sustentacular cell
teloglial cell
unclassifiable
zymogenic cell
Environmental Risk Factors
Alcohol
-- Choose --
Yes
No
Asbestos
-- Choose --
Yes
No
:
million fibers / g of dry tissue
Smoking
-- Choose --
Yes
No
:
pack years, start age:
, stop age:
Helicobacter pylori
-- Choose --
Yes
No
Human papillomavirus
-- Choose --
Yes
No
Miscellaneous
Organism
Homo sapiens
lvfbPAtT
Human
Canine
Source
-- Choose --
Fixed
Fresh
Fresh frozen
Paraffin embedded
Unknown
Sex
-- Choose --
Female
Male
Unknown
Surgery Curative
-- Choose --
Yes
No
Not performed
Tumor Size (diameter)
cm
Patient Status
-- Choose --
Alive
Dead
Unknown
Survival
months after diagnosis
Cause of Death
-- Choose --
Cancer
Complications in surgery
Other
Disease Phase
-- Choose --
Primary
Recurrent
Metastasis
Diagnosis
Relaps
Sampling Date
(Format: YYYY-MM-DD)
Notes
Microarray Result Attributes
Name
Type
-- Choose --
aCGH
mRNA
miRNA
SNP
ChIP
MeDIP
cCGH
Platform
-- Choose --
Affymetrix GeneChip Human Mapping 50K Xba flank
Affymetrix Genome-Wide Human SNP Array 5.0
Affymetrix Genome-Wide Human SNP Array 6.0
Affymetrix Human Genome U133 Plus 2.0
Affymetrix Human Genome U133A
Affymetrix Human Genome U133A 2.0
Affymetrix Human Genome U133B
Affymetrix Human Genome U95A
Affymetrix Human Genome U95Av2
Affymetrix Human Genome U95B
Affymetrix Human Genome U95C
Affymetrix Human Genome U95D
Affymetrix Human Genome U95E
Affymetrix Human Mapping 250K Nsp SNP
Affymetrix Human Mapping 250K Sty2 SNP
Affymetrix Human Mapping 50K Hind240 SNP
Affymetrix Human Mapping 50K Xba240 SNP
Agilent Human 1 cDNA Microarray (G4100A) [layout B]
Agilent Human 1A Microarray (G4110A)
Agilent Human 1A Microarray V2 (G4110B)
Agilent Human 1B Microarray (G4111A)
Agilent Human CNV Association Microarray 2x105K
Agilent Human Genome CGH Custom Microarray 2x415K (G4124A)
Agilent Human Genome CGH Microarray 105A (G4412A)
Agilent Human Genome CGH Microarray 244A (G4411B)
Agilent Human Genome CGH Microarray 244A (mskcc.org)
Agilent Human Genome CGH Microarray 244A-Supplemental
Agilent Human Genome CGH Microarray 44A (G4410A)
Agilent Human Genome CGH Microarray 44B (G4410B)
Agilent Human Genome CGH Microarray 4x44K
Agilent Human Genotypic Designed CGH 105k Microarray
Agilent Human miRNA Microarray
Agilent Human miRNA Microarray (V2)
Agilent Human miRNA Microarray (V3)
Agilent Human Promoter ChIP-on-Chip Set 244K Microarray 1 of 2
Agilent Human Promoter ChIP-on-Chip Set 244K Microarray 2 of 2
Agilent SurePrint G3 Human CGH Microarray 1x1M (G4447A)
Agilent SurePrint G3 Human CGH Microarray 2x400K
Agilent SurePrint G3 Human CGH Microarray 4x180K
Agilent SurePrint G3 Human CGH Microarray 4x180K CCA/VUmc Design
Agilent SurePrint G3 Human CGH Microarray 8x60K
Agilent SurePrint G3 Human CGHplusSNP Microarray 2X400K
Agilent SurePrint G3 Human CGHplusSNP Microarray 4X180K
Agilent SurePrint G3 Human CNV Microarray 2x400K
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M
Agilent Whole Human Genome Microarray Kit (G4112A)
Agilent Whole Human Genome Oligo Microarray 4x44K (G4112F)
Chromosomes
Genes
Karyotypes
Turku HUM 16K cDNA
VUMC Human 30K 60-mer oligo array
Link
PubMed IDs
(separated by commas)
Keywords
Notes
CanGEM
(C)
CMG - Laboratory of Cytomolecular Genetics
&
GIU - Genome Informatics Unit
session ID: 893c669cfdecbc240a9e9a7e9a042aa0