GIU - Genome Informatics Unit

CanGEM

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Wednesday, May 22, 2013

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CanGEM Documentation

[-] 1. General

1.1. Introduction
1.2. Description of different data entities
1.3. How samples are annotated
1.4. How microarray platforms are annotated
1.5. How the gene copy numbers are calculated

[-] 2. Searching from the database

2.1. Free text search
2.2. Advanced search using clinical attributes
2.3. Searching with the copy number status of a given gene
2.4. Creating custom datasets

[-] 4. Submitting new data

4.1. Introduction
4.2. How to add many microarray results at once (batch)

[-] 5. Miscellaneous

5.1. How to cite CanGEM
5.2. How to access the data from R/Bioconductor
5.3. How to install the root certificate