CanGEM
Go to GIU Home
Sunday, May 19, 2013
Home
|
Documentation
|
Microarray Data
|
Platforms
|
Detailed Search
Logged in as guest |
Register
Login:
Password:
Important Note
CanGEM requires JavaScript to be turned on for full functionality.
Platform Name
Agilent Human Genome CGH Microarray 44B (G4410B)
Accession
CG-PLM-4
Project
Database Core
Manufacturer
Agilent Technologies
Type
in situ oligonucleotide
Organism
Homo sapiens
GEO Accession
GPL11068
Link
http://www.chem.agilent.com/scripts/pds.asp?lpage=34840
Description
Agilent's Human Genome CGH Microarray Kit 44B is a high-resolution, high performance 60-mer oligonucleotide-based microarray that contains approximately 43,000 probes sourced from the NCBI genome Build 35. This microarray, in addition to containing all the Build 35-mapped biological probes from the previously-released CGH 44A microarray (Build 34), contains an additional ~2,500 probes to expand the coverage in the human genome.
Notes
Features
Comprehensive genome-wide coverage - Consists of~43,000 60-mer oligonucleotide probes that span both coding and noncoding sequences with an average spatial resolution of ~35kB.
Optimized probe design for CGH applications - Maximize confidence in microarray performance through the use of Agilent's powerful probe design algorithms and validation processes. Probe performance was validated in multiple model systems with defined aberrations.
High resolution and sensitivity - Reproducibly detect genome lesions including single-copy and homozygous deletions, as well as variable amplicons - enabled by Agilent's in situ synthesized 60-mer oligonucleotide probes.
Nanogram sample input - Only 100ng of total genomic DNA per sample is required so that you can conserve precious, limited, and hard-to-procure clinical samples.
Total genomic DNA with NO complexity reduction -Eliminates potential biases introduced by the process and maximizes the biological utility of the sample with a single, simplified sample preparation.
Focused coverage - Probe selection bias toward genes, particularly cancer-related ones, ensures adequate coverage in the most commonly studied genomic regions. Well-characterized genes are each represented by at least one 60-mer oligonucleotide probe and cancer-relevant genes are each represented by at least two or more probes.
44K slide format printed using Agilent's SurePrint technology
GPL2879 is the Feature Number version in GEO.
Data Files
Primary
013282_D_20050601.xml
(22.4 MB)
Sequences
G4410B_SequenceList.fasta
(2.94 MB)
CanGEM Generated
GRCh37.txt
(1.37 MB)
NCBI36.txt
(1.37 MB)
NCBI35.txt
(1.37 MB)
NCBI34.txt
(1.37 MB)
Created
2005-08-18 12:00:41 by
Ilari Scheinin
Last modified
2012-02-09 15:27:21 by
Ilari Scheinin
GUID: {A36CD446-AE53-475C-81D9-21F5A4D45768}
CanGEM
(C)
CMG - Laboratory of Cytomolecular Genetics
&
GIU - Genome Informatics Unit
session ID: b1ffcd0fc1770caec2dc3bf1e8900a50