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Experiment Name
Kaur et al.: Gene copy number changes in dermatofibrosarcoma protuberans - a fine-resolution study using array comparative genomic hybridization.
Accession
CG-EXP-29
Project
CMG Group Public
Authors
Kaur S, Vauhkonen H, Böhling T, Mertens F, Mandahl N, Knuutila S.
PubMed ID
17124411
Abstract
Dermatofibrosarcoma protuberans (DFSP) is a rare, slow-growing, low-grade dermal tumor. Cytogenetic and FISH studies have revealed that the chromosomal rearrangements characteristic of DFSP tumors involve both translocations and the formation of a supernumerary ring derived from chromosomes 17 and 22. The t(17;22) (q22;q13.1) translocation generates a gene fusion between COL1A1 and PDGFB, which serves as a diagnostic marker of DFSP. In the present study we performed array-CGH (aCGH) analysis on ten DFSP tumors. The COL1A1 region at 17q was gained in 71% (5/7) of the samples and the PDGFB region at 22q was gained in 43% (3/7) of the individual samples. In addition to the 17q and 22q gains, altogether 17 minimal common regions of gain and one region of loss were detected. Copyright (c) 2006 S. Karger AG, Basel.
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Contents
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Series:
Dermatofibrosarcoma protuberance
CG-SER-14
Data Files
CanGEM Generated
Gene calls.igv
(2.95 MB)
Gene frequencies.igv
(2 MB)
Supplements
APPENDIX 1.xls
(1.79 MB)
Created
2007-08-02 15:21:49 by
Sippy Kaur
Last modified
2007-08-16 18:11:23 by
Ilari Scheinin
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GUID: {5FAE3F25-537C-47B4-B62C-F91725CE14B9}
CanGEM
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CMG - Laboratory of Cytomolecular Genetics
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GIU - Genome Informatics Unit
session ID: c78c75b06f101a1b9f46ea2dced1e15c