Welcome to CanGEM

Cancer GEnome Mine is a public database for storing clinical information about tumor samples and microarray data, with emphasis on array comparative genomic hybridization (aCGH) and data mining of gene copy number changes.

Microarray Data

General

For citing and a description of the database, please see Scheinin et al.
More information is available in the documentation section.
For programmatic access from R, you can download the cangem package.
To contact the database administraror, please use this form.

Genes

Search: from chr
Top 10 genes with a

Gene Name Chromosome Frequency

KIAA0196 8 17%

NSMCE2 8 17%

ENSG00000208579 8 17%

KCNV1 8 16%

EIF3S3 8 16%

C8orf53 8 16%

RAD21 8 16%

NP_001020528.1 8 16%

SLC30A8 8 16%

ENSG00000208665 8 16%

Gene Name Chromosome Frequency

ZBTB48 1 17%

KLHL21 1 17%

PHF13 1 17%

NOL9 1 16%

TIGD2 4 16%

ENSG00000211134 4 16%

GPRIN3 4 16%

CSNK1A1L 13 16%

7SK 13 16%

KCNRG 13 16%
Download entire gene list
View aberration frequencies from chr:
Important: how the copy numbers are calculated